{"19422837": "Boolean network-based analysis of the apoptosis network: irreversible apoptosis and stable surviving.", "26340681": "A Dynamic Gene Regulatory Network Model That Recovers the Cyclic Behavior of Arabidopsis thaliana Cell Cycle.", "26616283": "Boolean modeling identifies Greatwall/MASTL as an important regulator in the AURKA network of neuroblastoma.", "22253585": "Network model of immune responses reveals key effectors to single and co-infection dynamics by a respiratory bacterium and a gastrointestinal helminth.", "26751566": "A Network Model to Describe the Terminal Differentiation of B Cells.", "23520449": "Canalization and control in automata networks: body segmentation in Drosophila melanogaster.", "26163548": "Logic-Based and Cellular Pharmacodynamic Modeling of Bortezomib Responses in U266 Human Myeloma Cells.", "24970389": "Boolean ErbB network reconstructions and perturbation simulations reveal individual drug response in different breast cancer cell lines.", "19185585": "Logical analysis of the budding yeast cell cycle.", "23049686": "Ergodic sets as cell phenotype of budding yeast cell cycle.", "23056457": "A boolean model of the cardiac gene regulatory network determining first and second heart field identity.", "25538703": "Design, Assessment, and in vivo Evaluation of a Computational Model Illustrating the Role of CAV1 in CD4(+) T-lymphocytes.", "26090929": "A Minimal Regulatory Network of Extrinsic and Intrinsic Factors Recovers Observed Patterns of CD4+ T Cell Differentiation and Plasticity.", "22871178": "The Cell Collective: toward an open and collaborative approach to systems biology.", "18463633": "Global control of cell-cycle transcription by coupled CDK and network oscillators.", "19025648": "Dynamical modeling of the cholesterol regulatory pathway with Boolean networks.", "26446703": "Network modelling reveals the mechanism underlying colitis-associated colon cancer and identifies novel combinatorial anti-cancer targets.", "20862356": "A Boolean model of the gene regulatory network underlying Mammalian cortical area development.", "20221256": "Mathematical modelling of cell-fate decision in response to death receptor engagement.", "23743337": "The regulatory network that controls the differentiation of T lymphocytes.", "19662154": "The logic of EGFR/ErbB signaling: theoretical properties and analysis of high-throughput data.", "23637902": "A comprehensive, multi-scale dynamical model of ErbB receptor signal transduction in human mammary epithelial cells.", "22267503": "A Boolean network model of the FA/BRCA pathway.", "26385365": "Fanconi anemia cells with unrepaired DNA damage activate components of the checkpoint recovery process.", "23868318": "Logical modelling of Drosophila signalling pathways.", "25790483": "Integrating interactive computational modeling in biology curricula.", "19144179": "Reconstruction and logical modeling of glucose repression signaling pathways in Saccharomyces cerevisiae.", "16968132": "Predicting essential components of signal transduction networks: a dynamic model of guard cell abscisic acid signaling.", "22962472": "Boolean approach to signalling pathway modelling in HGF-induced keratinocyte migration.", "25431332": "A logical model of HIV-1 interactions with the T-cell activation signalling pathway.", "26573569": "A Boolean network model of human gonadal sex determination.", "26088082": "Proteins interaction network and modeling of IGVH mutational status in chronic lymphocytic leukemia.", "21968890": "Large-scale network models of IL-1 and IL-6 signalling and their hepatocellular specification.", "29513758": "A systems pharmacology model for inflammatory bowel disease.", "23081726": "Dynamics of influenza virus and human host interactions during infection and replication cycle.", "25908096": "Iron acquisition and oxidative stress response in aspergillus fumigatus.", "21563979": "Boolean models can explain bistability in the lac operon.", "28584084": "Logical modeling of lymphoid and myeloid cell specification and transdifferentiation.", "26408858": "A dynamical model of the regulatory network controlling lymphopoiesis.", "16873462": "Dynamical analysis of a generic Boolean model for the control of the mammalian cell cycle.", "19118495": "Modeling ERBB receptor-regulated G1/S transition to find novel targets for de novo trastuzumab resistance.", "28361666": "Towards targeted combinatorial therapy design for the treatment of castration-resistant prostate cancer.", "24250280": "Integrative modelling of the influence of MAPK network on cancer cell fate decision.", "26102287": "Inference of Network Dynamics and Metabolic Interactions in the Gut Microbiome.", "17010384": "Boolean network analysis of a neurotransmitter signaling pathway.", "23134720": "Boolean modeling and fault diagnosis in oxidative stress response.", "27148350": "Boolean Modeling Reveals the Necessity of Transcriptional Regulation for Bistability in PC12 Cell Differentiation.", "26207376": "Predicting Variabilities in Cardiac Gene Expression with a Boolean Network Incorporating Uncertainty.", "27594840": "Modeling the Pro-inflammatory Tumor Microenvironment in Acute Lymphoblastic Leukemia Predicts a Breakdown of Hematopoietic-Mesenchymal Communication Networks.", "28639170": "Bistability and Asynchrony in a Boolean Model of the L-arabinose Operon in Escherichia coli.", "29206223": "A model of the onset of the senescence associated secretory phenotype after DNA damage induced senescence.", "26244885": "An Extended, Boolean Model of the Septation Initiation Network in S.Pombe Provides Insights into Its Regulation.", "18250321": "Emergent decision-making in biological signal transduction networks.", "18433497": "A logic-based diagram of signalling pathways central to macrophage activation.", "27542373": "Analysis of a dynamic model of guard cell signaling reveals the stability of signal propagation.", "16542429": "A method for the generation of standardized qualitative dynamical systems of regulatory networks.", "17722974": "A logical model provides insights into T cell receptor signaling.", "16464248": "A methodology for the structural and functional analysis of signaling and regulatory networks.", "18852469": "Network model of survival signaling in large granular lymphocyte leukemia.", "22102804": "Dynamical and structural analysis of a T cell survival network identifies novel candidate therapeutic targets for large granular lymphocyte leukemia.", "23171249": "The TOL network of Pseudomonas putida mt-2 processes multiple environmental inputs into a narrow response space.", "26528548": "Mathematical Modelling of Molecular Pathways Enabling Tumour Cell Invasion and Migration.", "23233838": "Boolean model of yeast apoptosis as a tool to study yeast and human apoptotic regulations.", "11082279": "Shape-dependent control of cell growth, differentiation, and apoptosis: switching between attractors in cell regulatory networks.", "1753781": "A discrete model for immune surveillance, tumor immunity and cancer.", "18194572": "Host-pathogen systems biology: logical modelling of hepatocyte growth factor and Helicobacter pylori induced c-Met signal transduction.", "19524598": "Uncovering operational interactions in genetic networks using asynchronous Boolean dynamics.", "19622164": "Adapted Boolean network models for extracellular matrix formation.", "20169167": "A Boolean model of the Pseudomonas syringae hrp regulon predicts a tightly regulated system.", "20659480": "Attractor analysis of asynchronous Boolean models of signal transduction networks.", "21450717": "A qualitative continuous model of cellular auxin and brassinosteroid signaling and their crosstalk.", "21639591": "Exploring phospholipase C-coupled Ca(2+) signalling networks using Boolean modelling.", "21853041": "Hierarchical differentiation of myeloid progenitors is encoded in the transcription factor network.", "22192526": "\"Antelope\": a hybrid-logic model checker for branching-time Boolean GRN analysis.", "22448278": "Understanding communication signals during mycobacterial latency through predicted genome-wide protein interactions and boolean modeling.", "23169817": "Attractor landscape analysis reveals feedback loops in the p53 network that control the cellular response to DNA damage.", "23469179": "Robustness and backbone motif of a cancer network regulated by miR-17-92 cluster during the G1/S transition.", "23630177": "Intervention in gene regulatory networks with maximal phenotype alteration.", "23658556": "Finding Missing Interactions of the Arabidopsis thaliana Root Stem Cell Niche Gene Regulatory Network.", "23764028": "In vivo, in vitro, and in silico studies suggest a conserved immune module that regulates malaria parasite transmission from mammals to mosquitoes.", "23935937": "Structural and logical analysis of a comprehensive hedgehog signaling pathway to identify alternative drug targets for glioma, colon and pancreatic cancer.", "24069138": "Boolean network model predicts knockout mutant phenotypes of fission yeast.", "24079299": "Understanding the sequential activation of Type III and Type VI Secretion Systems in Salmonella typhimurium using Boolean modeling.", "24376455": "Validation of gene regulatory network inference based on controllability.", "24564942": "Boolean genetic network model for the control of C. elegans early embryonic cell cycles.", "25063553": "A model integration approach linking signalling and gene-regulatory logic with kinetic metabolic models.", "25163068": "Boolean network model of the Pseudomonas aeruginosa quorum sensing circuits.", "25189528": "Network modeling of TGF\u03b2 signaling in hepatocellular carcinoma epithelial-to-mesenchymal transition reveals joint sonic hedgehog and Wnt pathway activation.", "25780058": "Network-based identification of feedback modules that control RhoA activity and cell migration.", "25967891": "Reshaping the epigenetic landscape during early flower development: induction of attractor transitions by relative differences in gene decay rates.", "25980672": "A systems-biological study on the identification of safe and effective molecular targets for the reduction of ultraviolet B-induced skin pigmentation.", "26346668": "Activation of Apoptotic Signal in Endothelial Cells through Intracellular Signaling Molecules Blockade in Tumor-Induced Angiogenesis.", "26564978": "Temporal protein expression pattern in intracellular signalling cascade during T-cell activation: a computational study.", "26603105": "Integrated network model provides new insights into castration-resistant prostate cancer.", "27138333": "A MAPK-Driven Feedback Loop Suppresses Rac Activity to Promote RhoA-Driven Cancer Cell Invasion.", "27464342": "Model-Based Characterization of Inflammatory Gene Expression Patterns of Activated Macrophages.", "27613445": "A comprehensive approach to the molecular determinants of lifespan using a Boolean model of geroconversion.", "27765040": "Attractor landscape analysis of colorectal tumorigenesis and its reversion.", "28187161": "Modeling hormonal control of cambium proliferation.", "28209158": "Gene regulatory network underlying the immortalization of epithelial cells.", "28381275": "Quantitative evaluation and reversion analysis of the attractor landscapes of an intracellular regulatory network for colorectal cancer.", "28426669": "A dynamic genetic-hormonal regulatory network model explains multiple cellular behaviors of the root apical meristem of Arabidopsis thaliana.", "28455685": "Inferring Intracellular Signal Transduction Circuitry from Molecular Perturbation Experiments.", "29186334": "Phenotypic stability and plasticity in GMP-derived cells as determined by their underlying regulatory network.", "29230182": "A Network Model to Explore the Effect of the Micro-environment on Endothelial Cell Behavior during Angiogenesis.", "29237040": "Conceptual and computational framework for logical modelling of biological networks deregulated in diseases.", "29378814": "Modeling signaling-dependent pluripotency with Boolean logic to predict cell fate transitions.", "29596489": "A Boolean network of the crosstalk between IGF and Wnt signaling in aging satellite cells.", "29622038": "The phenotype control kernel of a biomolecular regulatory network.", "29632237": "Network-Based Analysis of Bortezomib Pharmacodynamic Heterogeneity in Multiple Myeloma Cells.", "30024932": "Modeling the role of microRNA-449a in the regulation of the G2/M cell cycle checkpoint in prostate LNCaP cells under ionizing radiation.", "30038409": "Construction of Discrete Model of Human Pluripotency in Predicting Lineage-Specific Outcomes and Targeted Knockdowns of Essential Genes.", "30104572": "Determining Relative Dynamic Stability of Cell States Using Boolean Network Model.", "30148917": "[Analysis of organ donation for transplantation in Chile during 2017].", "30281473": "In Silico Design and Experimental Validation of Combination Therapy for Pancreatic Cancer.", "30323768": "Dynamics of the Gene Regulatory Network of HIV-1 and the Role of Viral Non-coding RNAs on Latency Reversion.", "30518777": "Boolean Calcium Signalling Model Predicts Calcium Role in Acceleration and Stability of Abscisic Acid-Mediated Stomatal Closure.", "30530226": "Towards the contribution of the p38MAPK pathway to the dual role of TGF\u03b2 in cancer: A boolean model approach.", "30546316": "Gene Regulatory Network Modeling of Macrophage Differentiation Corroborates the Continuum Hypothesis of Polarization States.", "30953496": "Boolean network modeling of \u03b2-cell apoptosis and insulin resistance in type 2 diabetes mellitus.", "31130988": "WIP1 Contributes to the Adaptation of Fanconi Anemia Cells to DNA Damage as Determined by the Regulatory Network of the Fanconi Anemia and Checkpoint Recovery Pathways.", "31516637": "Logical modelling reveals the PDC-PDK interaction as the regulatory switch driving metabolic flexibility at the cellular level.", "31949240": "A Boolean Model of Microvascular Rarefaction to Predict Treatment Outcomes in Renal Disease.", "32054948": "Integrative data modeling from lung and lymphatic cancer predicts functional roles for miR-34a and miR-16 in cell fate regulation.", "1016": "A comparison of the substrate specificities of endo-beta-N-acetylglucosaminidases from Streptomyces griseus and Diplococcus Pneumoniae.", "26660865": "Identification of Th1/Th2 regulatory switch to promote healing response during leishmaniasis: a computational approach.", "33780439": "Mathematical modeling of the Candida albicans yeast to hyphal transition reveals novel control strategies.", "35752283": "Uncovering potential interventions for pancreatic cancer patients via mathematical modeling."}